Latch Bio MCP

Live

OAUTH 2.0

AI

AI

Latch Bio is a cloud bioinformatics platform for running computational biology workflows. Its MCP server lets AI agents list and retrieve files, manage...

  • Acts as the user: Every tool call runs as the authorizing user. Access and audit trail stay intact.
  • Credentials stay vaulted: AES-256 encrypted, resolved at request time, never stored in LLM context.
  • Scoped before every call: Per-user permissions enforced automatically. 90-day audit trail included.
Latch Bio MCP
agent · Acme Q3
Run
Get Execution in Latch Bio MCP
S
latchbiomcp_get_execution
85ms
Latch Bio MCP agent
Fetch the status, task nodes, and results for a workflow execution. if a workflow errors, use get_task_logs to retrieve .
Sources: Latch Bio MCP
latchbiomcpmcp
1 tool call
18:29
Message Claude...

Latch Bio MCP tools for AI agents

CALL ANY TOOL
9 tools covering get.
latchbiomcp_get_execution
Fetch the status, task nodes, and results for a workflow exe
Fetch the status, task nodes, and results for a workflow execution. if a workflow errors, use get_task_logs to retrieve logs for failed tasks. supports paginating through execution nodes and map-task shards.
Parameters
Name
Type
Required
Description
execution_id
integer
Required
Latch execution id returned by launch_workflow.
rationale
string
Required
Always provide a brief explanation of why you are calling this tool
execution_node_cursor
string
Optional
Opaque cursor from execution_nodes.next_cursor.
execution_node_limit
integer
Optional
Max execution nodes to return, from 1 to 500. Default 100.
map_task_cursor
string
Optional
Opaque cursor from a previous map-task page. Requires map_task_execution_node_id.
map_task_execution_node_id
string
Optional
Optional execution node id whose map-task shard list should be paginated with map_task_cursor.
latchbiomcp_get_file
Return access information for a file stored in latch data. r
latchbiomcp_get_task_logs
Fetch or share logs for a workflow task execution. returns b
latchbiomcp_get_workflow_schema
Fetch the launch metadata and parameter schema for a workflo
latchbiomcp_launch_workflow
Launch a bioinformatics workflow on latch. use get_workflow_
latchbiomcp_list_executions
List workflow executions in a latch workspace. supports filt
latchbiomcp_list_files
List the immediate contents of a directory in latch data (ld
latchbiomcp_list_workflows
Discover available bioinformatics workflows on latch. lists
latchbiomcp_list_workspaces
Lists latch workspaces the current user can access. returns
Build your Agent
Same auth pattern across every framework.
Python · LlamaIndex
from langchain_mcp_adapters.client import MultiServerMCPClient
from scalekit import ScalekitClient

client = ScalekitClient(env_url=ENV_URL, client_id=CLIENT_ID, client_secret=SECRET)
token = client.agent.get_token(user_id="user_id", connector="latchbiomcp")

mcp = MultiServerMCPClient({
"latchbiomcp": {
"url": "https://mcp.scalekit.com/latchbiomcp",
"headers": {"Authorization": "Bearer " + token}
}
})
tools = await mcp.get_tools()
import OpenAI from "openai";
import { ScalekitClient } from "@scalekit-sdk/node";

const client = new ScalekitClient({ envUrl, clientId, clientSecret });
const token = await client.agent.getToken({ userId: "user_id", connector: "latchbiomcp" });

const openai = new OpenAI();
// Connect to MCP at https://mcp.scalekit.com/latchbiomcp
// Pass: Authorization: Bearer + token
import Anthropic from "@anthropic-ai/sdk";
import { ScalekitClient } from "@scalekit-sdk/node";

const client = new ScalekitClient({ envUrl, clientId, clientSecret });
const token = await client.agent.getToken({ userId: "user_id", connector: "latchbiomcp" });

const anthropic = new Anthropic();
// Connect to MCP at https://mcp.scalekit.com/latchbiomcp
// Pass: Authorization: Bearer + token
from google.adk.agents import LlmAgent
from scalekit import ScalekitClient

client = ScalekitClient(env_url=ENV_URL, client_id=CLIENT_ID, client_secret=SECRET)
token = client.agent.get_token(user_id="user_id", connector="latchbiomcp")
# Connect to MCP at https://mcp.scalekit.com/latchbiomcp
# Pass: Authorization: Bearer + token
Try these prompts
Paste any prompt into your agent to get started.
Get started
Copy the prompt
Copied
Lists Latch workspaces the current user can access?
Copy the prompt
Copied
Launch a bioinformatics workflow on Latch?
Advanced
Copy the prompt
Copied
Fetch the launch metadata and parameter schema for a workflow?
SEE HOW AUTH WORKS
User authorises once. Every agent call after uses their token with scope enforcement.
1
Authorize
Your user connects
Latch Bio MCP
once. We tie it to their identity and the meetings they approved — no shared bot account, no org-wide access
Who:
user ‘A’
when:
Once per user
access:
Limited to user
2
Store
Their
Latch Bio MCP
token lives in a vault scoped to them. User A's meetings are never reachable by an agent acting for user B, even on the same connection
vault:
encrypted
scope:
per-user
tokens:
auto-refreshed
3
Resolve
When your agent calls a
Latch Bio MCP
tool, we fetch the right token server-side. It never touches your agent, never appears in the LLM context, never shows up in your logs
speed:
~40ms
check:
before every call
seen by:
nobody
4
Audit
Every
Latch Bio MCP
tool call is logged — who triggered it, which meeting was fetched, what came back. 90 days of history, tied to the user who authorized it
history:
90 days
export:
SIEM-ready
logged:
every call
Test other agents
See the same per-user auth pattern across other connectors.
No items found.
Why Scalekit
Secure your agent's access. Connectors ship in minutes
Other connector libraries treat auth as a demo afterthought.
01.
Shared tokens break per-user analytics
A shared token looks fine in a demo. In production every call looks like a service account. Scalekit resolves the real user credential.
// shared token
audit → bot_service_account

// scalekit
audit → user_abc ✓
02.
Authentication is not authorization
03.
Multi-tenancy is architectural
04.
One connector today. Ten tomorrow.
“Our agents act across Salesforce, Gong, Google Drive, and more, on behalf of every customer. Scalekit behind the scenes meant we can keep adding tools without ever rebuilding how credentials or tool calling work.”
Venu Madhav Kattagoni
Head of Engineering / Von
FAQs
Frequently Asked Questions

Does the agent access Latch Bio as the user or as a shared key?
As the user. Each workspace member authorizes once and Scalekit resolves their credential at request time. Audit logs attribute every action to that user, not a shared service account.

Where is the Latch Bio OAuth token stored?
In Scalekit's managed AES-256 token vault, namespaced per tenant. Refresh is automatic. Revocation is a single dashboard action. Tokens never appear in prompts, logs, or LLM context.

Can I limit what the agent is allowed to do in Latch Bio?
Yes. Pass a tool name filter to listScopedTools so the AI agent only sees the subset you authorize. Pre-API-call scope checks block out-of-policy actions before the request reaches Latch Bio.

What happens when a user revokes Latch Bio access?
The connection is invalidated on the next tool call. Subsequent requests for that user fail closed with a clear error. Other users in the tenant remain unaffected. The event is logged for audit.

Which workflows and files can the agent launch or read?
Only those in the authorizing user's Latch Bio workspace. Workflow launches, execution logs, and file reads follow the user's project membership per call.

Start in your coding agent
Up and running in one command
Install the Scalekit skill in your editor of choice. Connector, auth, tools, prompt, all wired up
Claude Code REPL
/plugin marketplace add scalekit-inc/claude-code-authstack
/plugin install agentkit@scalekit-auth-stack
Cursor Code REPL
# ~/.cursor/mcp.json
{
""mcpServers"": {
""latchbiomcp"": {
""url"": ""https://mcp.scalekit.com/latchbiomcp"",
""headers"": { ""Authorization"": ""Bearer $SCALEKIT_TOKEN"" }
}
}
}
Codex Code REPL
# ~/.codex/config.toml
[mcp_servers.latchbiomcp]
url = ""https://mcp.scalekit.com/latchbiomcp""
auth_env = ""SCALEKIT_TOKEN""
Copilot Code REPL
# .vscode/mcp.json
{
""servers"": {
""latchbiomcp"": {
""url"": ""https://mcp.scalekit.com/latchbiomcp"",
""type"": ""http""
}
}
}